WebFeb 18, 2024 · The figure presents the assignments of cells and TFs to the reconstructed branching model for the process studies. Each edge (path) represents a set of infinite states parameterized by the path number and … WebCSHMM-TF-for-time-series-scRNA-Seq / example_train_and_analysis.ipynb Go to file Go to file T; Go to line L; Copy path Copy permalink; This commit does not belong to any …
Inferring TF activation order in time series scRNA-Seq studies
WebCSHMM-TF-for-time-series-scRNA-Seq / treutlein2016-2 Go to file Go to file T; Go to line L; Copy path Copy permalink; This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository. Cannot retrieve contributors at this time. 24 MB Download WebCSHMM-TF-for-time-series-scRNA-Seq / example_train_and_analysis.ipynb Go to file Go to file T; Go to line L; Copy path Copy permalink; This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository. Cannot retrieve contributors at this time. iphone se s3
Temporal modelling using single-cell transcriptomics
WebCSHMM-TF-for-time-series-scRNA-Seq / CSHMM_TF_train_release.py Go to file Go to file T; Go to line L; Copy path Copy permalink; This commit does not belong to any branch … WebThe aim of the present study was to identify the differentially-expressed genes of embryonic day 14 (ED 14) rat liver in comparison to adult rat liver, which may provide specific information for the investigation of the hepatogenesis mechanism. The gene expression profiles of ED 14 and adult rat livers were investigated using microarray analysis (the … WebMar 26, 2024 · We developed a probabilistic model based on Continuous-State Hidden Markov Model (CSHMM) to reconstruct trajectories and branchings from time series scRNA-Seq data. The model is then extended by learning the dynamics of regulatory interactions that take place during the process being studied (CSHMM-TF). iphone se safe mode boot